There's two very quick DID scenes in the second Macross Frontier movie, Sayonara no Tsubasa. First, Sheryl Nome is handcuffed (in front), and second Ranka Lee is handgagged (by Brera).
Unfortunately, since I was watching the movie in chunks rather than as a single file I can't give a running time for either instance. I can only narrow them down to the middle third of the movie.
Anime Sightings Old and New - Macross Frontier movie 2
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